PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018945.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 357aa    MW: 38159.2 Da    PI: 4.6783
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018945.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.2e-17272308135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cgt+   Tp++Rrgpdg++tLCnaCGl+++ kgl
  Do018945.1 272 CHHCGTSAtaTPMMRRGPDGPRTLCNACGLMWANKGL 308
                 ******9999***********************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.373136171IPR010399Tify domain
SMARTSM009799.6E-12136171IPR010399Tify domain
PfamPF062005.5E-13139170IPR010399Tify domain
PfamPF062031.2E-15196238IPR010402CCT domain
PROSITE profilePS5101713.334196238IPR010402CCT domain
SMARTSM004014.9E-13266324IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.605266314IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.8E-12270320No hitNo description
CDDcd002021.84E-15271314No hitNo description
Gene3DG3DSA:3.30.50.102.2E-16271313IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440272299IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15272308IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSHHDGSKPY QPRRGPERPP QPADEVAAPP PANVAPAVDH LAAVAADVEA LNRYAEEHHQ  60
QQQLQVHEQA VEEDEEEEDE EEDEMEEDED EQEGQDGGVG GEHVAMDADA AAAAAAAAAA  120
GAQMDPHGTM VPGAVPPMAT NQLTLSFQGE VYVFDSVSPD KVQAVLLLLG GRELNNLGNA  180
ASSSSSYSKR LNFPHRVASL MRFREKRKER NFDKKIRYTV RKEVALRMQR NRGQFTSSKP  240
KPDEIAASEM MTADGSPNWG LVEGRPPSAA ECHHCGTSAT ATPMMRRGPD GPRTLCNACG  300
LMWANKGLLR DLSKAPLPLQ AVQSAPVLDG GNGSVIAAPG GELENPGAMA NGHESST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966124.11e-177PREDICTED: GATA transcription factor 24-like isoform X2
SwissprotQ5Z4U51e-142GAT20_ORYSJ; GATA transcription factor 20
TrEMBLK3XXU71e-177K3XXU7_SETIT; Uncharacterized protein
STRINGSi006750m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.17e-63ZIM-like 1